Search: tissue_specificity_rna:smooth muscle;Tissue enriched AND sort_by:tissue specific score

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AND NOT

Field

All – GENE INFO – Gene name Protein class Chromosome External id – DATA AVAILABILITY – Has protein data – DATA RELIABILITY – Reliability score tissue (IHC) Reliability score mouse brain Reliability score cells (ICC/IF) – ANTIBODY VALIDATION – Protein array Western blot Immunohistochemistry Immunocytochemistry – PRIMARY DATA – Subcellular localization Tissue expression (IHC) RNA tissue category RNA cell category RNA cancer category Tissue detectable (RNA) Cell line detectable (RNA) Cancer detectable (RNA) Prognostic cancer – PROTEIN EVIDENCE – Evidence summary UniProt evidence HPA evidence MS evidence – ANTIBODIES – With antibodies – EXTRA – Sort by

Term

Gene name

Class

Blood group antigen proteins Cancer-related genes Candidate cardiovascular disease genes CD markers Citric acid cycle related proteins Disease related genes Enzymes FDA approved drug targets G-protein coupled receptors Mapped to UniProt SWISS-PROT Nuclear receptors Plasma proteins Potential drug targets Predicted intracellular proteins Predicted membrane proteins Predicted secreted proteins Protein evidence (Ezkurdia et al 2014) Protein evidence (Kim et al 2014) RAS pathway related proteins Ribosomal proteins RNA polymerase related proteins Transcription factors Transporters Voltage-gated ion channels

Subclass

Chromosome

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 MT Unmapped X Y

External id

In atlas

Tissue Pathology Cell

Reliability

Supported Approved Uncertain

Reliability

Supported Approved

Reliability

Validated Supported Approved Uncertain

Validation

Supported Approved

Method

Formal Standard

Validation

Method

Formal Standard

Validation

Method

Formal Standard

Validation

Location

Actin filaments Aggresome Cell Junctions Centrosome Cytokinetic bridge Cytoplasmic bodies Cytosol Endoplasmic reticulum Endosomes Focal adhesion sites Golgi apparatus Intermediate filaments Lipid droplets Lysosomes Microtubule ends Microtubule organizing center Microtubules Midbody Midbody ring Mitochondria Mitotic spindle Nuclear bodies Nuclear membrane Nuclear speckles Nucleoli Nucleoli fibrillar center Nucleoplasm Nucleus Peroxisomes Plasma membrane Rods & Rings Vesicles

Searches

– RELIABILITY – Validated Supported Approved Uncertain – SUBCELLULAR VARIATION – Intensity variation Spatial variation Cell cycle intensity correlation Cell cycle spatial correlation Cell cycle biologically Custom data cell cycle dependant – MULTILOCALIZATION – Multilocalizing Localizing 1 Localizing 2 Localizing 3 Localizing 4 Localizing 5

Tissue

Any Adrenal gland Appendix Bone marrow Breast Bronchus Caudate Cerebellum Cerebral cortex Cervix, uterine Colon Duodenum Endometrium 1 Endometrium 2 Epididymis Esophagus Eye Fallopian tube Gallbladder Hair Heart muscle Hippocampus Hypothalamus Kidney Lactating breast Liver Lung Lymph node Nasopharynx Oral mucosa Ovary Pancreas Parathyroid gland Pituitary gland Placenta Prostate Rectum Retina Salivary gland Seminal vesicle Skeletal muscle Skin Skin 1 Skin 2 Small intestine Smooth muscle Soft tissue 1 Soft tissue 2 Spleen Stomach 1 Stomach 2 Testis Thyroid gland Tonsil Urinary bladder Vagina

Cell type

Expression

Not detected Low Medium High

Tissue

Any Adipose tissue Adrenal gland Appendix Bone marrow Breast Cerebral cortex Cervix, uterine Colon Duodenum Endometrium Epididymis Esophagus Fallopian tube Gallbladder Heart muscle Kidney Liver Lung Lymph node Ovary Pancreas Parathyroid gland Placenta Prostate Rectum Salivary gland Seminal vesicle Skeletal muscle Skin Small intestine Smooth muscle Spleen Stomach Testis Thyroid gland Tonsil Urinary bladder

Specificity

Tissue enriched Group enriched Tissue enhanced Elevated Expressed in all Mixed Not detected

Cell line

Any A-431 A549 AF22 AN3-CA ASC TERT1 BEWO BJ BJ hTERT+ BJ hTERT+ SV40 Large T+ BJ hTERT+ SV40 Large T+ RasG12V CACO-2 CAPAN-2 Daudi EFO-21 HaCaT HBF TERT88 HDLM-2 HEK 293 HEL HeLa Hep G2 HL-60 HMC-1 HTCEpi HUVEC TERT2 K-562 Karpas-707 LHCN-M2 MCF7 MOLT-4 NB-4 NTERA-2 PC-3 REH RH-30 RPMI-8226 RPTEC TERT1 RT4 SCLC-21H SH-SY5Y SiHa SK-BR-3 SK-MEL-30 T-47d THP-1 TIME U-138 MG U-2 OS U-2197 U-251 MG U-266/70 U-266/84 U-698 U-87 MG U-937 WM-115

Specificity

Cell line enriched Group enriched Cell line enhanced Elevated Expressed in all Mixed Not detected

Cancer

Any Breast cancer Cervical cancer Colorectal cancer Endometrial cancer Glioma Head and neck cancer Liver cancer Lung cancer Melanoma Ovarian cancer Pancreatic cancer Prostate cancer Renal cancer Stomach cancer Testis cancer Thyroid cancer Urothelial cancer

Specificity

Tissue enriched Group enriched Tissue enhanced Elevated Expressed in all Mixed Not detected

Tissue

Detectable

Yes No

Cell line

Detectable

Yes No

Cancer

Detectable

Yes No

Cancer

Breast cancer Cervical cancer Colorectal cancer Endometrial cancer Glioma Head and neck cancer Liver cancer Lung cancer Melanoma Ovarian cancer Pancreatic cancer Prostate cancer Renal cancer Stomach cancer Testis cancer Thyroid cancer Urothelial cancer

Prognosis

Favourable Unfavourable